为了救神谷薰（武井咲 饰），绯村剑心（佐藤健 饰）纵身跃入大海，昏迷中他飘到某座小岛，最终为传授了他飞天御剑流的师父比古清十郎（福山雅治 饰）所救。深感到自身与志志雄真实（藤原龙也 饰）的巨大差距，为了拯救全日本，剑心恳请师傅传授他飞天御剑流的最高奥义。与此同时，志志雄剑指东京，迈出武力夺国的下一步。他强迫伊藤博文（小泽征悦 饰）对刽子手拔刀斋发布全国通缉令，得知消息的薰、左之助（青木崇高 饰）则匆匆向东京赶去。再度上路的剑心率先遭到御庭番众的首领四乃森苍紫（伊势谷友介 饰）的阻击，他一路披荆斩棘，将迎来与宿命的对手志志雄最终的对决…… 本片根据和月伸宏的同名经典漫画改编。Kenshin wakes up to find himself at his master(Hiko Seijuro)'s house after getting washed by the waves to land while he was unconscious at sea for 3 days. Kenshin asks Seijuro to teach him the ultimate and pinnacle technique of the Hiten Mitsurugi school, the Amakakeru Ryu no Hirameki. Seijuro accepts Kenshin's request after they spar with each other. Meanwhile in Tokyo, Prime Minister Hirobumi Ito attends a meeting with Makoto Shishio who forces him to declare Kenshin a wanted outlaw and have him publicly executed or else Shishio will destroy both Tokyo and the government.
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